The first genetic system was established not in the top-down manner (RNA world hypothesis) but in the bottom-up manner (GADV hypothesis)

Main Article Content

Kenji Ikehara, Emeritus Professor

Abstract

What is necessary to elucidate the origin of life, is to make clear establishment process of the first genetic system composed of gene, tRNA (genetic code) and protein. Two ideas, RNA world hypothesis and [GADV]-protein world hypothesis or GADV hypothesis, have been proposed to elucidate the origin of life through making clear the establishment process of the genetic system. [GADV] or GADV means four amino acids; Gly [G], Ala [A], Asp [D] and Val [V]. In the RNA world hypothesis, it is considered that the genetic system was formed in order of gene, tRNA (genetic code) and protein along the flow of gene expression or in a “top-down manner”. Contrary to that, the GADV hypothesis is an idea that the genetic system was formed in order of protein, tRNA (genetic code) and gene as going against the flow of gene expression or in a “bottom-up manner”. It was investigated which one is valid for explaining formation process of the first genetic system. Consequently, it has been concluded that the origin of life cannot be made clear by the RNA world hypothesis or in the “top-down manner”. On the other hand, it has been confirmed that the process from chemical evolution to emergence of the first life can be reasonably explained according to the GADV hypothesis or in the “bottom-up manner”.

Keywords: Origin of life, Genetic system, RNA world hypothesis, GADV hypothesis, Top-down vs. bottom-up, Gene, tRNA, protein, Chemical evolution, Pseudo-replication, Glycine, Alanine, Aspartic acid, Valine (GADV), Genetic code

Article Details

How to Cite
IKEHARA, Kenji. The first genetic system was established not in the top-down manner (RNA world hypothesis) but in the bottom-up manner (GADV hypothesis). Medical Research Archives, [S.l.], v. 12, n. 7, july 2024. ISSN 2375-1924. Available at: <https://esmed.org/MRA/mra/article/view/5457>. Date accessed: 15 nov. 2024. doi: https://doi.org/10.18103/mra.v12i7.5457.
Section
Review Articles

References

1. Crick F. Central dogma of molecular biology. Nature. 1970;227:561-563.

2. Ikehara K. Towards Revealing the Origin of life.—Presenting the GADV Hypothesis. 2021; Springer Nature, Gewerbestrasse Cham, Switzerland.

3. Corliss JB., Dymond J, Gordon LI, Edmond JM, von Herzen RP, Ballard RD, Green K, Williams D, Bainbridge A, Crane K, van Andel TH. Submarine thermal springs on the galapagos rift. Science. 1979;203:1073–1083.

4. Holm NG, Andersson E, Hydrothermal simulation experiments as a tool for studies of the origin of life on Earth and other terrestrial planets. A review. Astrobiology, 2005;5:444–460.

5. Zhang X, Tian G, Gao J, Han M, Su R, Wang Y, Feng S. Prebiotic synthesis of glycine from ethanolamine in simulated Archean alkaline hydrothermal vents. Orig Life Evol Biosph. 2017;47:413-425.

6. Arrhenius S. Evolution of the universe. 1908; Harper, London, United Kingdom.

7. Temple R. The prehistory of panspermia: astrophysical or metaphysical? 2007; Cambridge University Press, Cambridge, United Kingdom.

8. Furukawa Y, Chikaraishi Y, Ohkouchi N, Ohkouchi N, Ogawa NO, Glavin DP, Dworkin JP, Abe C, Nakamura T. Extraterrestrial ribose and other sugars in primitive meteorites. Proc. Natl. Acad. Sci. 2019;116:24440-24445.

9. Sankaran N. How the discovery of ribozymes cast RNA in the roles of both chicken and egg in origin-of-life theories. Stud Hist Philos Biol Biomed Sci. 2012;43:741-750.

10. Gilbert W. The RNA world. Nature. 1986;319:618.

11. Kruger K, Grabowski PJ, Zaug AJ, Sands J, Gottschling DE, Cech TR. Self-splicing RNA: autoexcision and autocyclization of ribosomal RNA intervening sequence of Tetrahymena. Cell. 1982;31:147-157.

12. Guerrier-Takada C, Gardiner K, Marsh T, Pace N, Altman S. The RNA moiety of ribonuclease P is catalytic subunit of the enzyme. Cell. 1983;35:849-857.

13. Tagami S, Li P. The origin of life: RNA and protein co-evolution on the ancient Earth. Dev Growth Differ. 2023;65:167-174.

14. Müller F, Escobar L, Xu F, Węgrzyn E, Nainytė M, Amatov T, Chan CY, Pichler A, Carell T. A prebiotically plausible scenario of an RNA-peptide world. Nature. 2022;605:279-284.

15. Rivera-Madrinan F, Di Iorio K, Higgs PG. Rolling Circles as a Means of Encoding Genes in the RNA World. Life. 2022;12(9): 1373.

16. Saito H. The RNA world 'hypothesis'. Nat Rev Mol Cell Biol. 2022;23:582.

17. Fine JL, Pearlman RE. On the origin of life: an RNA-focused synthesis and narrative. RNA. 2023;29:1085–1098.

18. Berg JM, Tymoczko JL, Stryer L. Biochemistry 5th ed. 2002; W. H. Freeman and Company/New York.

19. Dill KA. Dominant forces in protein folding. Biochemistry. 1990;29:7133-7155.

20. Ikehara K. Origins of gene, genetic code, protein and life: Comprehensive view of life system from a GNC-SNS primitive genetic code hypothesis. J Biosci. 2002;27:165–186.

21. Ikehara K. Possible steps to the emergence of life: The [GADV]-protein world hypothesis. Chem. Rec. 2005;5:107–118.

22. Ikehara K, Amada F, Yoshida S, Mikata Y, Tanaka A. A possible origin of newly-born bacterial genes: Significance of GC-rich nonstop frame on antisense strand. Nucl Acids Res. 1996;24:4249–4255.

23. Ikehara K, Yoshida S. SNS hypothesis on the origin of the genetic code. Viva Origino. 1996;26:301–310.

24. Ikehara K, Omori Y, Arai R, Hirose A. A novel theory on the origin of the genetic code: a GNC-SNS hypothesis. J Mol Evol. 2002;54:530–538.

25. Ikehara K. Why Were [GADV]-amino Acids and GNC Codons Selected and How Was GNC Primeval Genetic Code Established? Genes. 2023;14(2):375

26. Ikehara K. Pseudo-replication of [GADV]-proteins and origin of life. Int J Mol Sci. 2009;10:1525–1537.

27. Ikehara K. Protein ordered sequences are formed by random joining of amino acids in protein 0th-order structure followed by evolutionary process. Orig Life Evol Biosph. 2014;44:279–281.

28. Ikehara K. How was the first gene formed in the absence of gene. Preprints. 2023; 2023071624.