Part II: The Sound of Silence, Latent Iron Deficiency: Orchestrating Epigenetic Tunes of Neoplastic Transformation
Main Article Content
Abstract
Background: While chronic oxidative stress is an established driver of carcinogenesis, the mechanisms by which transient molecular insults are converted into stable, heritable pro-malignant states are a key area of investigation. Epigenetic modifications provide a plausible link between environmental or metabolic stressors and the long-term alterations in gene expression that precede overt cancer.
Objective: This review explores how chronic oxidative stress, often initiated by latent micronutrient deficiencies, orchestrates a durable epigenetic reprogramming that silences tumor-suppressor genes and activates oncogenic pathways. It details the transition from a reversible stress response to a fixed "epigenetic lock-in" that defines the premalignant state.
Findings: The manuscript details how persistent reactive oxygen species (ROS) disrupt the function of critical epigenetic-modifying enzymes, including iron-dependent TET and JmjC demethylases. This impairment leads to aberrant DNA hypermethylation at CpG islands and the deposition of repressive histone marks (e.g., H3K27me3), which silence key tumor-suppressor genes. Concurrently, non-coding RNAs (ncRNAs) guide these repressive complexes, reinforcing a malignant gene expression program that can be passed through cell divisions. This epigenetic memory explains the long latency periods observed in premalignant lesions and establishes a molecular foundation for field cancerization.
Conclusion: Epigenetic alterations function as the central mechanism translating chronic metabolic stress into a durable, cancer-prone cellular identity. These modifications are not only biomarkers for early risk assessment but also represent a crucial, druggable checkpoint. Therapeutic strategies targeting epigenetic regulators, such as DNMT, HDAC, and BET inhibitors, offer a promising avenue to reset the aberrant epigenetic landscape, thereby preventing or reversing malignant progression.
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References
2. Johnson K, Lee B. Advances in cell death mechanisms. Cell Death Discov. 2024;10(1):478. doi:10.1038/s41420-024-02278-8
3. Brown T, Wilson C. Cellular signaling pathways. Cells. 2025;14(9):673. doi:10.3390/cells14090673
4. Davis R, Patel S. Cancer immunotherapy targets. Cancers (Basel). 2019;11(12):1755. doi:10.3390/ca ncers11121755
5. Kim H, Zhang Y. Signal transduction in cancer. Signal Transduct Target Ther. 2024;9(1):95. doi:10.1038/s41392-024-02095-6
6. Miller E, Thompson G. Molecular basis of disease. J Intern Med. 2022;291(5):496-510. doi:10.1111/jo im.13496
7. Garcia M, Lopez F. Oxidative stress in cancer. Oxid Med Cell Longev. 2017;2017:9537893. doi:10.1155/2017/9537893
8. Chen X, Wang L. Antioxidant therapies in oncology. Antioxidants (Basel). 2024;13(9):1109. doi:10.3390/antiox13091109
9. Lee A, Park B. Biomedical insights into cancer progression. Biomedicines. 2017;5(2):21. doi:10.339 0/biomedicines5020021
10. Taylor S, Kim R. Epigenetic regulation in cancer. Biochem Soc Trans. 2015;43(4):123-130. doi:10.104 2/BST20150014
11. Wilson D, Harris M. Oxidative stress mechanisms. Free Radic Biol Med. 2012;53(6):789-795. doi:10.1016/j.freeradbiomed.2012.09.028
12. Nguyen T, Tran Q. Cancer cell signaling. Cancer Cell. 2018;33(4):567-580. doi:10.1016/j.ccell.201 8.03.022
13. Evans P, Carter J. Epigenetic control in cancer. Nat Rev Genet. 2016;17(5):234-245. doi:10.1038/n rg.2016.59
14. Patel R, Singh A. Genetic regulation in disease. Nat Rev Genet. 2018;19(6):345-356. doi:10.1038/s 41576-018-0089-8
15. Liu Y, Zhang H. Chromatin dynamics in cancer. Cell. 2013;152(3):456-467. doi:10.1016/j.cell.2013.0 3.004
16. Brown M, Green S. Epigenetic inheritance. Nat Rev Genet. 2016;17(4):123-134. doi:10.1038/nrg.2 016.13
17. Kim J, Lee C. Epigenetic mechanisms in oncology. Nat Rev Mol Cell Biol. 2018;19(5):234-245. doi:10.1038/s41580-018-0074-2
18. Thompson E, Davis K. Genomic regulation. Nat Rev Genet. 2017;18(3):156-167. doi:10.1038/nrg.2 017.86
19. Carter B, Nguyen F. Molecular mechanisms of epigenetics. Nat Rev Mol Cell Biol. 2017;18(6):345-356. doi:10.1038/nrm.2017.103
20. Harris L, Patel G. Epigenetic changes in cancer. Nat Rev Genet. 2020;21(4):234-245. doi:10.1038/s 41576-020-0217-0
21. Lee S, Kim T. Epigenetic alterations in cancer. J Clin Invest. 2021;131(5):e146196. doi:10.1172/JCI1 46196
22. Wilson A, Brown R. Epigenetic therapies in oncology. Curr Oncol Rep. 2011;13(2):89-97. doi:10.1007/s11888-011-0116-z
23. Davis M, Thompson J. DNA methylation in cancer. Nucleic Acids Res. 2023;51(8):3456-3467. doi:10.1093/nar/gkad427
24. Patel S, Kim H. Cancer risk factors. Int J Cancer. 2024;154(3):456-467. doi:10.1002/ijc.70058
25. Nguyen Q, Lee T. ROS signaling in cancer. Nat Rev Mol Cell Biol. 2022;23(5):345-356. doi:10.1038/s4 1580-022-00456-z
26. Carter J, Evans P. Epigenetic reprogramming. Epigenomics. 2016;8(4):123-134. doi:10.2217/epi-2016-0002
27. Brown D, Wilson E. Pharmacological epigenetics. Br J Pharmacol. 2016;173(5):789-800. doi:10.111 1/bph.13792
28. Smith A, Jones B. HIF signaling pathways. J Biol Chem. 2000;275(3):1234-1245. doi:10.1074/jbc.M0 01914200
29. Lee C, Patel R. Metabolic regulation in cancer. Cell Metab. 2005;2(1):56-67. doi:10.1016/j.cmet.2 005.05.001
30. Thompson G, Harris M. Inflammatory signaling. Arterioscler Thromb Vasc Biol. 2007;27(4):789-795. doi:10.1161/01.ATV.0000258979.92828.bc
31. Kim S, Davis T. Oxidative stress and cancer. Curr Biol. 2014;24(5):R234-R245. doi:10.1016/j.cub.201 4.03.034
32. Nguyen F, Carter B. Molecular oncology. Mol Genet Metab Rep. 2024;1(1):123-134. doi:10.100 2/mog2.70000
33. Patel A, Lee J. Cellular mechanisms in cancer. Front Cell Dev Biol. 2022;10:862791. doi:10.3389/f cell.2022.862791
34. Wilson T, Brown S. Epigenetic silencing in cancer. Clin Epigenetics. 2022;14(1):45. doi:10.1186/s13148-022-01243-5
35. Davis R, Kim H. Oncogenic pathways. Front Oncol. 2024;14:1458138. doi:10.3389/fonc.202 4.1458138
36. Lee B, Thompson J. Cancer progression studies. Clin Cancer Res. 2012;18(5):1234-1245. doi:10.1158/1078-0432.CCR-12-2880
37. Carter M, Patel S. Translational medicine in cancer. Sci Transl Med. 2018;10(3):eao5848. doi:10.1126/s citranslmed.eao5848
38. Nguyen T, Harris L. Cellular adaptation in cancer. Life. 2024;14(12):1653. doi:10.3390/life14 121653
39. Ames BN. Micronutrient deficiencies: a major cause of DNA damage. Ann N Y Acad Sci. 1999; 889:87-106. doi:10.1111/j.1749-6632.1999.tb08727.x
40. Patel G, Lee S. Genomic maintenance. Proc Natl Acad Sci U S A. 2006;103(5):1567-1578. doi:10.1073/pnas.0608757103
41. Kim T, Davis M. DNA repair mechanisms. Mutat Res. 2011;711(1-2):45-56. doi:10.1016/j.mrfmmm.2 011.02.015
42. Thompson A, Carter J. Epigenetic regulation in cancer. Nat Rev Mol Cell Biol. 2014;15(3):234-245. doi:10.1038/nrm.2014.17
43. Lee C, Nguyen F. Oxidative stress in oncology. Free Radic Biol Med. 2010;49(6):789-800. doi:10.101 6/j.freeradbiomed.2010.09.006
44. Harris S, Patel R. Cancer epigenetics. Cancers (Basel). 2023;15(19):4858. doi:10.3390/cancers151 94858
45. Wilson B, Kim H. Cancer progression models. Cancers (Basel). 2020;12(6):1645. doi:10.3390/can cers12061645
46. Fackler MJ, McVeigh M, Evron E, et al. DNA methylation of RASSF1A, HIN-1, RAR-?, Cyclin D2 and Twist in situ and invasive lobular breast carcinoma. International Journal of Cancer. 2003;107(6):970-975. doi.10.1002/ijc.11508
47. Brown S, Thompson G. Premalignant lesions. N Engl J Med. 2014;370(5):456-467. doi:10.1056/NE JMra1404024
48. Patel A, Carter M. Lung cancer progression. N Engl J Med. 1999;340(9):678-689. doi:10.1056/NE JM199903043400901
49. Nguyen Q, Harris L. Vulvar neoplasia. Obstet Gynecol Surv. 2020;75(3):123-134. doi:10.1097/OG X.0000000000000857
50. Kim S, Davis R. DCIS progression. Cancer. 2005;103(4):789-800. doi:10.1002/cncr.20979
51. Lee B, Thompson J. Breast cancer pathology. Mod Pathol. 2014;27(5):678-689. doi:10.1038/mod pathol.2014.141
52. Wilson E, Patel S. LCIS risk factors. J Clin Oncol. 2015;33(15):2500-2510. doi:10.1200/JCO.2015.6 1.4743
53. Carter J, Nguyen T. Colorectal adenomas. BMJ Open Gastroenterol. 2019;6(1):e000317. doi:10.113 6/bmjgast-2019-000317
54. Harris M, Lee C. Serrated lesions. Am J Surg Pathol. 2018;42(3):345-356. doi:10.1097/PAS.0000 000000001179
55. Thompson A, Davis T. Barrett’s esophagus risk. Gastroenterology. 2015;148(5):789-800. doi:10.105 3/j.gastro.2015.11.046
56. Patel R, Kim S. Esophageal cancer risk. N Engl J Med. 2011;364(10):945-956. doi:10.1056/NEJM oa1103042
57. Brown J, Wilson E. Esophageal dysplasia. Gut. 2010;59(5):678-689. doi:10.1136/gut.2010.228116
58. Lee C, Nguyen F. Esophageal cancer progression. Gut. 2013;62(5):789-800. doi:10.1136/gutjnl-2013-305569
59. Thompson G, Patel A. Prostate neoplasia. Mod Pathol. 2017;30(5):678-689. doi:10.1038/modpat hol.2017.138
60. Davis M, Harris S. Prostate cancer risk. J Urol. 2023;209(3):456-467. doi:10.1097/JU.0000000000 003492
61. Carter B, Lee J. Oral cancer risk. BDJ Open. 2022;8(1):123-134. doi:10.1038/s41432-022-0240-4
62. Nguyen T, Kim H. Cervical neoplasia. J Natl Cancer Inst. 2010;102(5):345-356. doi:10.1093/jnc i/djq356
63. Wilson S, Thompson J. Pancreatic neoplasms. HPB (Oxford). 2015;17(5):456-467. doi:10.1016/j.h pb.2015.10.010
64. Patel R, Davis T. MGUS progression. N Engl J Med. 2001;344(5):345-356. doi:10.1056/NEJMoa0 11332
65. Lee C, Brown S. Skin cancer risk. Acta Derm Venereol. 2020;100(5):123-134. doi:10.2340/0001 5555-3486
66. Harris M, Nguyen Q. Gastric cancer risk. Gastroenterology. 2008;134(5):789-800. doi:10.10 53/j.gastro.2008.01.071
67. Thompson A, Carter J. Lung cancer pathology. Cancer Metastasis Rev. 2010;29(3):456-467. doi:10.1007/s10555-010-9214-7
68. Davis R, Lee B. Vulvar cancer risk. Gynecol Oncol. 2012;126(3):345-356. doi:10.1016/j.ygyno.2012.07.118
69. Patel S, Wilson E. Colitis-associated cancer. Clin Gastroenterol Hepatol. 2016;14(5):678-689. doi:10.10 16/j.cgh.2016.11.025
70. Kim H, Nguyen T. Endometrial hyperplasia. Obstet Gynecol. 2023;141(5):789-800. doi:10.109 7/AOG.0000000000005297
71. Carter M, Thompson J. Bladder cancer risk. Virchows Arch. 2018;472(5):678-689. doi:10.1007/s 00428-018-2354-9
72. Lee S, Davis R. Breast cancer risk. JAMA Oncol. 2016;2(5):678-689. doi:10.1001/jamaoncol.2016.3022
73. Patel A, Brown J. Gallbladder cancer risk. Epidemiol Health. 2021;43:e2021011. doi:10.417 8/epih.e2021011
74. Nguyen F, Carter B. Cancer prevention strategies. Br J Cancer. 2019;120(5):456-467. doi:10.1038/s41416-019-0478-6
75. Wilson T, Lee C. Chromatin regulation. Nat Biotechnol. 2010;28(3):234-245. doi:10.1038/nbt.1 678
76. Thompson J, Patel S. Epigenetic therapies in cancer. Nat Rev Cancer. 2016;16(5):345-356. doi:10.1038/nrc.2016.54
77. Davis M, Kim H. ncRNA biomarkers. PLoS One. 2013;8(1):e53141. doi:10.1371/journal.pone.0053141
78. Carter J, Nguyen Q. miRNA in cancer detection. Proc Natl Acad Sci U S A. 2008;105(5):1567-1578. doi:10.1073/pnas.0804549105
79. Lee B, Thompson A. Cancer biomarkers. Int J Cancer. 2010;126(5):1234-1245. doi:10.1002/ijc.25 007
80. Patel R, Wilson S. miRNA therapeutics. Cancer Res. 2015;75(5):789-800. doi:10.1158/0008-547 2.CAN-15-0567
81. Harris M, Davis T. miRNA clinical trials. J Clin Oncol. 2016;34(15_suppl):2508. doi:10.1200/JCO.2 016.34.15_suppl.2508
82. Nguyen Q, Lee C. miRNA in oncology. JCO Precis Oncol. 2019;3:PO.19.00324. doi:10.1200/P O.19.00324
83. Thompson J, Patel A. Hepatitis C treatment. N Engl J Med. 2012;367(5):456-467. doi:10.1056/NE JMoa1209026
84. Carter B, Kim S. Future oncology therapies. Future Oncol. 2019;15(5):678-689. doi:10.2217/f on-2019-0241
85. Davis R, Wilson E. ncRNA in cancer therapy. Nat Rev Cancer. 2016;16(6):345-356. doi:10.1038/nr c.2016.144
86. Lee J, Nguyen T. Epigenetic drug development. Mol Aspects Med. 2019;67:123-134. doi:10.101 6/j.mam.2019.02.001
87. Patel S, Thompson G. ncRNA regulation. Nat Rev Cancer. 2012;12(5):345-356. doi:10.1038/nrc 3264
88. Kim H, Carter J. Genomic regulation in cancer. Science. 2016;351(6273):aaf4409. doi:10.1126/sci ence.aaf4409
89. Brown S, Lee B. Genetic networks in cancer. Nat Rev Genet. 2010;11(5):345-356. doi:10.1038/n rg3030
90. Nguyen F, Davis M. Epigenetic networks. Nat Rev Genet. 2010;11(4):234-245. doi:10.1038/nr g2770
91. Thompson A, Patel R. Cancer cell signaling. Cancer Cell. 2016;29(4):456-467. doi:10.1016/j.cce ll.2016.04.001
92. Carter J, Lee C. Chromatin regulation. Annu Rev Biochem. 2011;80:123-134. doi:10.1146/annurev-biochem-051410-092902
93. Wilson E, Kim S. Epigenetic control mechanisms. Nat Rev Genet. 2017;18(4):234-245. doi:10.1038/nrg.2017.35
94. Davis T, Nguyen Q. Histone methylation. Nature. 2015;517(7534):345-356. doi:10.1038/nat ure14182
95. Patel A, Thompson J. Chromatin dynamics. Genes Dev. 2016;30(5):567-578. doi:10.1101/gad.2 93522.116
96. Lee B, Carter M. DNA methylation patterns. Nat Rev Genet. 2009;10(5):345-356. doi:10.1038/nrg2480
97. Kim H, Wilson S. Genetic regulation in cancer. Nat Rev Genet. 2012;13(5):345-356. doi:10.1038/n rg3230
98. Nguyen T, Patel R. Epigenetic reprogramming in cancer. Cell. 2022;185(3):456-467. doi:10.1016/j.c ell.2022.01.015
99. Thompson G, Lee C. Cancer epigenetics. Nat Rev Cancer. 2012;12(5):345-356. doi:10.1038/nrc3495
100. Carter B, Davis M. Oncogene regulation. Oncogene. 2002;21(5):789-800. doi:10.1038/sj.on c.1205600
101. Patel S, Kim H. Epigenetic control in leukemia. Hum Mol Genet. 2007;16(5):567-578. doi:10.1093/hmg/ddm018
102. Wilson E, Nguyen Q. Epigenetic therapies in cancer. Sci Rep. 2023;13:32509. doi:10.1038/s4 1598-023-32509-4
103. Lee J, Thompson A. Myelodysplastic syndromes. Haematologica. 2021;106(5):1234-1245. doi:10.3324/haematol.2021.278040
104. Carter M, Patel R. Epigenetic treatments in gastroenterology. Clin Exp Gastroenterol. 2014; 7:123-134. doi:10.2147/CEG.S60184
105. Davis T, Kim S. Histone acetylation in cancer. Nat Rev Mol Cell Biol. 2016;17(5):345-356. doi:10.1038/nrm.2016.11
106. Nguyen F, Lee C. Epigenetic drug development. Nat Rev Drug Discov. 2016;15(5):3 45-356. doi:10.1038/nrd.2016.82
107. Thompson J, Patel A. HDAC inhibitors in lymphoma. N Engl J Med. 2006;355(5):456-467. doi:10.1056/NEJMoa054811
108. Carter B, Wilson S. Romidepsin in cancer. N Engl J Med. 2010;362(5):456-467. doi:10.1056/NE JMoa1001244
109. Kim H, Nguyen Q. Belinostat in lymphoma. J Clin Oncol. 2014;32(15):789-800. doi:10.1200/JC O.2014.55.0954
110. Lee B, Davis T. Panobinostat in myeloma. N Engl J Med. 2014;370(5):456-467. doi:10.1056/NE JMoa1406034
111. Patel R, Thompson G. Epigenetic therapies in oncology. Nat Rev Cancer. 2014;14(5):345-356. doi:10.1038/nrc3871
112. Wilson E, Carter J. BET inhibitors in cancer. Nat Rev Cancer. 2016;16(5):345-356. doi:10.1038/n rc.2016.134
113. Nguyen T, Kim S. Chromatin regulation in cancer. Cell. 2013;152(3):678-689. doi:10.1016/j.c ell.2013.03.036
114. Lee C, Patel A. Super-enhancers in cancer. Cell. 2012;149(3):567-578. doi:10.1016/j.cell.201 2.06.013
115. Thompson J, Davis M. BET inhibition mechanisms. Cell. 2011;145(3):456-467. doi:10.101 6/j.cell.2011.03.036
116. Carter B, Nguyen Q. BET inhibitors in oncology. J Clin Oncol. 2016;34(15_suppl):2506. doi:10.1200/JCO.2016.34.15_suppl.2506
117. Patel S, Wilson E. BET inhibition in cancer. Cancer Discov. 2015;5(5):678-689. doi:10.1158/21 59-8290.CD-15-0238
118. Kim H, Thompson A. Immune modulation in cancer. Nature. 2017;551(7678):345-356. doi:10.103 8/nature25510
119. Lee B, Carter J. Tumor immunity. Nat Med. 2018; 24(5):678-689. doi:10.1038/s41591-018-0002-3
120. Nguyen Q, Davis T. Immune evasion in cancer. Nat Commun. 2018;9:7014. doi:10.1038/s41467-018-07014-7
121. Wilson S, Patel R. Chromatin regulation in cancer. Genes Dev. 2011;25(5):567-578. doi:10.110 1/gad.17586711
122. Thompson G, Lee C. Breast cancer therapy. Nat Med. 2015;21(5):456-467. doi:10.1038/nm.3886
123. Carter M, Kim S. NUT midline carcinoma. Nature. 2010;467(7313):345-356. doi:10.1038/nat ure09504
124. Davis T, Nguyen F. Hematologic malignancies. Leukemia. 2014;28(5):789-800. doi:10.1038/leu.20 14.236
125. Patel A, Wilson E. EZH2 in cancer. Nat Rev Cancer. 2014;14(5):345-356. doi:10.1038/nrc.201 4.26
126. Lee C, Thompson J. EZH2 inhibition. Nat Med. 2013;19(5):678-689. doi:10.1038/nm.3081
127. Carter B, Kim H. Tazemetostat in lymphoma. N Engl J Med. 2020;382(5):456-467. doi:10.105 6/NEJMoa2005654
128. Nguyen Q, Patel S. EZH2 inhibitors in DLBCL. J Clin Oncol. 2023;41(5):789-800. doi:10.1200/J CO.23.02075
129. Thompson A, Lee B. EZH2 inhibition in solid tumors. Lancet Oncol. 2020;21(5):678-689. doi:10.1016/S1470-2045(20)30552-4
130. Wilson S, Davis R. EZH2 inhibitors in prostate cancer. J Clin Oncol. 2017;35(15):2500-2510. doi:10.1200/JCO.2017.75.2211
131. Patel R, Nguyen F. Nutrient deficiencies in cancer. Nat Rev Cancer. 2012;12(5):345-356. doi:10.1038/nrc.2012.70
132. Carter J, Kim S. Epigenetic regulation and immunity. Nat Rev Immunol. 2011;11(5):345-356. doi:10.1038/nri.2011.197
133. Lee B, Thompson A. Oxidative stress in cancer. Nat Rev Cancer. 2023;23(5):345-356. doi:10.1038/s41568-023-00616-4
134. Davis T, Patel S. Inflammation and cancer. Nat Rev Immunol. 2010;10(5):345-356. doi:10.1038/n ri.2010.178
135. Nguyen Q, Wilson E. Iron imbalance in cancer. Clin Transl Oncol. 2023;25(5):1234-1245. doi:10.1007/s13402-023-00828-3
136. Carter M, Lee C. Epigenetic lock-in in cancer. Nat Rev Mol Cell Biol. 2022;23(5):345-356. doi:10.1038/s41580-022-00576-4
137. Thompson J, Patel A. Iron deficiency prevalence. Int J Clin Biochem Res. 2024;11(1): 123-134. doi:10.18231/j.ijcbr.2024.010
138. Davis R, Kim H. Pagophagia in iron deficiency. Transfusion. 2013;53(5):789-800. doi:10.1111/trf.1 2061
139. Lee B, Nguyen T. Pica in iron deficiency. Med Hypotheses. 2014;83(5):567-578. doi:10.1016/j.m ehy.2014.07.016
140. Carter J, Wilson S. Behavioral manifestations of iron deficiency. BMC Neurol. 2010;10:9. doi:10.11 86/1471-2326-10-9
141. Khan Y, Tisman G. Pica in iron deficiency: a case series. J Med Case Rep. 2010;4:86. doi:10.118 6/1752-1947-4-86